Publications
The Energetics and Evolution of Oxidoreductases in Deep Time
Nanda, V., McGuinness, K.N., Fehon, N., Miller, M., Mutter, A.C., Nam, J. AbuSalim, J.E., Atkinson, J.T., Heidari, H., Losada, N., Kim, J.D., Koder, R.L., Lu, Y., Silberg, J., Slusky, J., Falkowski, P.F. (2024) Prot. Struct. Funct. Bioinf. 92(8): 52-59
Protein Dynamics Govern the Oxyferrous State Lifetime of an Artificial Oxygen Transport Protein
Zhang,L., Brown, M.C., Mutter, A.C., Cooley, J.W., Koder R.L. (2023) Biophysical J. 122(22):4440-4450
An expandable, modular de novo protein platform for precision redox engineering
Hutchins, G.H, Noble, C.E.M, Bunzel, H.A., Williams, C., Dubiel, P., Vadiv, S.K.N, Molinaro, P.M., Barringer, R., Blackburn, H., Hardy, B.J., Parnell,, A.E., Koder, R.L., Crump, M., Schaffitzel, C., Oliveira, A.S.F., Mullholland, A.J., Anderson, J.L.R. (2023) Proc. Nat. Acad. Sci. USA 120 (31) e2306046120
Design of a Minimal Di-Nickel Hydrogenase Peptide
Timm, J., Pike, D.H., Mancini, J.A., Tyryshkin, A.M., Poudel, S., Siess, J.A., Molinaro, P.M., McCann, J.J., Walkdie, K.M., Koder, R.L., Falkowski, P.G., Nanda, V. (2023) Science Advances 9, eabq1990
Probing Charge Transport Through Peptide Bonds
Brisendine, J.M., Refaely-Abramson, S., Liu, Z.F., Cui, J., Ng, F., Neaton, J.B., Koder, R.L., Venkataraman, L.J. (2018) The Journal of Physical Chemistry Letters 9:763–767
Rational Design of a Zinc Phthalocyanine Binding Protein
Mutter, A.C., Norman, J.C., Tiederman, M.T., Singh, S., Stillman, M.J., Koder, R.L. (2014) J. Struct. Biol. 185:178-185
Dynamic Factors Affecting Gaseous Ligand Binding in an Artificial Oxygen Transport Protein
Zhang, L., Andersen, E.M.E., Khajo, A., Magliozzo, R.S., Koder, R.L. Biochemistry (2013) 52:447−455
Zhang, L., Andersen, E.M.E., Khajo, A., Magliozzo, R.S., Koder, R.L. Biochemistry (2013) 52:447−455
Fundamental Limits on Wavelength, Efficiency and Yield of the Charge Separation Triad
Punnoose, A., McConnell, L., Liu, W., Mutter, A.C., Koder, R.L.. (2012) PLOS One 7(6):e36065
Manipulating Heme Binding Thermodynamics in an Artificial Oxygen Transport Protein
Zhang, L., Anderson, J.L.R., Ahmed, I., Norman, J.A., Negron, C., Mutter, A.C., Dutton, P.L., Koder R.L. (2011) Biochemistry 50:10254-10261
Design Principles for Chlorophyll Binding Sites in Helical Proteins
Braun, P., Goldberg, E., Negron, C., von Jan, M, Xu, F., Nanda, V., Koder, R.L., Noy, D. (2011) Prot. Struct. Func. Bioinform. 79:463-476
Geometric Constraints for Porphyrin Binding in Helical Protein Binding Sites
Negron, C., Fufezan, C., Koder, R.L. (2009) Prot. Struct. Func. Bioinform. 74:400-416